AB Translate

--translate, -tr

Description

Convert nucleotide sequences to amino acid sequences. The alignment will be adjusted with the enforce_triplets tool before translation and the canonical genetic code is used.

Example

Input file: Mle-Panx-TMD2.gb

LOCUS       Mle-Panxα9               201 bp    DNA              UNK 01-JAN-1980
DEFINITION
ACCESSION   Mle-Panxα9
VERSION     Mle-Panxα9
KEYWORDS    .
SOURCE
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     TMD2            115..177
ORIGIN
        1 tg-t------ -----a---- cacc---agt cagactcaag --------ga cggtacgagg
       61 ttaaagtgcc cagaccctga tcagttgttg tcaccgacgc ggatatccca cctatggtac
      121 cagtgggtcc ctttttactt ctggttggcg gctgctgcct tcttcatgcc ctaccttctg
      181 tacaagaatt t---tggcat g
//
LOCUS       Mle-Panxα7A              201 bp    DNA              UNK 01-JAN-1980
DEFINITION
ACCESSION   Mle-Panxα7A
VERSION     Mle-Panxα7A
KEYWORDS    .
SOURCE
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     TMD2            112..174
ORIGIN
        1 tg-t------ ---------a taga---gat gg-------- agctgatatc tgggggcaga
       61 gtagagtgtc ctgaagagaa agacgtcaag cctttcacca ggatatacca atcttggtac
      121 ccatttgtga tgttttacta ttggctgact gctttgatgt ttttcttgcc gtaccagctt
      181 tacaaggtct t---tggttt t
//
LOCUS       Mle-Panxα3               201 bp    DNA              UNK 01-JAN-1980
DEFINITION
ACCESSION   Mle-Panxα3
VERSION     Mle-Panxα3
KEYWORDS    .
SOURCE
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     TMD2            115..177
ORIGIN
        1 tg-t------ ---------a gaga---gca cgctctgaaa --------aa cggaggaaag
       61 atagtctgcc ctcctgaaga tcaagtgaag cccctgaccc gggctcgaca tctctggtac
      121 cagtggatac ctttctactt ctgggtgata gctccagtct tctatctccc ttacatgttt
      181 gtgaaaagga t---gggact t
//

Usage

$: alb Mle-Panx-TMD2.gb -tr

Output

LOCUS       Mle-Panxα9                60 aa                     UNK 01-JAN-1980
DEFINITION
ACCESSION   Mle-Panxα9
VERSION     Mle-Panxα9
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     TMD2            33..53
ORIGIN
        1 ct-pvrlk-- dgtrlkcpdp dqllsptris hlwyqwvpfy fwlaaaaffm pyllyknfgm
//
LOCUS       Mle-Panxα7A               60 aa                     UNK 01-JAN-1980
DEFINITION
ACCESSION   Mle-Panxα7A
VERSION     Mle-Panxα7A
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     TMD2            32..52
ORIGIN
        1 c-ieme--li sggrvecpee kdvkpftriy qswypfvmfy ywltalmffl pyqlykvfgf
//
LOCUS       Mle-Panxα3                60 aa                     UNK 01-JAN-1980
DEFINITION
ACCESSION   Mle-Panxα3
VERSION     Mle-Panxα3
KEYWORDS    .
SOURCE      .
  ORGANISM  .
            .
FEATURES             Location/Qualifiers
     TMD2            33..53
ORIGIN
        1 c-rehalk-- nggkivcppe dqvkpltrar hlwyqwipfy fwviapvfyl pymfvkrmgl
//