SB Map features prot2nucl
Transfer protein feature annotations onto their corresponding nucleotide sequences. The nucleotide and amino acid files must be separate.
SeqBuddy will throw a warning if it finds sequences in either file that are not also present in the other, but this can be silenced with the -q flag.
LOCUS Mle-Panxα4 425 aa UNA 02-JAN-2015
DEFINITION cDNA and genomic - ML129317a.
ACCESSION Mle-Panxα4
VERSION Mle-Panxα4
KEYWORDS .
SOURCE
ORGANISM . . . .
.
FEATURES Location/Qualifiers
TMD1 28..48
TMD2 131..151
TMD3 215..235
TMD4 305..335
ORIGIN
1 mviellagyk glspfkdatv ddswdqinrc yvfiamvvmg avttmrqysg tliacdgftk
61 fhpqfaedyc wsigmytvre aydlpssmva ypgvipwdmp acvprllkng trtkcgsekd
121 vmpsekiyhl wyqwasfyfw ivailyyapy imfkqlggge ykplikllcl asgspeqqmq
181 diqervvkwl ffrfktyifa kgyyawlrkn sfsiaigvtk lsyllitilv fyltgfmfey
241 gsntwyryga dwygtrfssy hetnnsitlt kdiifpkmva ceikrwgpsg ievetaqcvl
301 apnvlyqylf lftwylliav fftnliscfl hisemffsng tynrmidqgm lpdkpsyryv
361 fmnigaggre ivqiltdnsn pllfskifdd ltnllittsk nadvienlsk ldssvielgs
421 kdsi*
//
>Mle-Panxα4 cDNA and genomic - ML129317a.
AUGGUUAUUGAGCUGCUAGCUGGAUACAAAGGUCUGUCCCCGUUUAAAGACGCGACUGUU
GACGACUCAUGGGACCAAAUAAACCGAUGUUACGUGUUCAUCGCCAUGGUGGUGAUGGGU
GCUGUGACUACAAUGAGGCAAUACUCUGGAACAUUGAUUGCAUGUGACGGGUUCACGAAG
UUCCACCCUCAGUUUGCAGAAGAUUACUGCUGGAGCAUAGGAAUGUACACGGUACGCGAG
GCCUAUGACUUGCCCAGCAGUAUGGUUGCAUACCCCGGAGUGAUACCCUGGGAUAUGCCU
GCAUGUGUUCCACGUCUCCUGAAGAACGGAACCAGGACCAAAUGUGGCAGUGAGAAGGAC
GUUAUGCCCUCAGAGAAAAUCUACCACUUGUGGUACCAGUGGGCAAGUUUCUACUUCUGG
AUAGUGGCUAUACUGUACUACGCGCCGUAUAUAAUGUUCAAACAGUUGGGAGGGGGAGAG
UACAAGCCCCUGAUCAAGCUACUUUGUCUUGCGUCUGGAUCUCCUGAACAACAGAUGCAG
GACAUCCAGGAGCGUGUCGUCAAGUGGCUUUUCUUCAGGUUUAAGACCUACAUAUUCGCU
AAGGGUUACUACGCGUGGCUACGUAAAAACAGUUUCAGUAUCGCUAUCGGCGUGACAAAA
UUGUCCUAUCUCCUGAUAACUAUCCUUGUGUUCUACUUAACAGGCUUCAUGUUCGAAUAU
GGCUCUAACACGUGGUACCGGUACGGUGCUGACUGGUACGGUACCAGAUUCUCCUCGUAC
CACGAAACUAACAACUCAAUCACACUCACAAAGGACAUCAUCUUCCCAAAGAUGGUAGCG
UGUGAGAUCAAGCGAUGGGGUCCCUCAGGGAUUGAGGUUGAGACCGCUCAGUGCGUACUU
GCCCCGAAUGUGCUCUACCAGUACCUUUUCCUCUUUACUUGGUACCUCCUGAUCGCGGUA
UUCUUCACUAACCUCAUCAGUUGUUUCCUCCACAUUUCUGAGAUGUUCUUCUCUAACGGU
ACGUACAACAGGAUGAUAGAUCAAGGAAUGUUGCCAGACAAGCCCAGUUAUCGGUACGUC
UUCAUGAACAUUGGCGCCGGUGGCAGAGAGAUAGUCCAGAUUCUAACAGACAAUUCCAAC
CCCCUCUUGUUUAGCAAGAUAUUUGACGAUCUUACCAAUUUACUAAUCACUACUUCCAAA
AACGCUGACGUCAUUGAAAACCUGUCGAAGUUGGAUUCCUCCGUAAUUGAACUAGGCAGC
AAAGACUCAAUCUAA
$: sb Mle-Panxα4_mrna.fa Mle-Panxα4_pep.gb -fp2n
LOCUS Mle-Panxα4 1275 bp RNA UNK 01-JAN-1980
DEFINITION Mle-Panxα4 cDNA and genomic - ML129317a.
ACCESSION Mle-Panxα4
VERSION Mle-Panxα4
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
TMD1 82..144
TMD2 391..453
TMD3 643..705
TMD4 913..1005
ORIGIN
1 augguuauug agcugcuagc uggauacaaa ggucuguccc cguuuaaaga cgcgacuguu
61 gacgacucau gggaccaaau aaaccgaugu uacguguuca ucgccauggu ggugaugggu
121 gcugugacua caaugaggca auacucugga acauugauug caugugacgg guucacgaag
181 uuccacccuc aguuugcaga agauuacugc uggagcauag gaauguacac gguacgcgag
241 gccuaugacu ugcccagcag uaugguugca uaccccggag ugauacccug ggauaugccu
301 gcauguguuc cacgucuccu gaagaacgga accaggacca aauguggcag ugagaaggac
361 guuaugcccu cagagaaaau cuaccacuug ugguaccagu gggcaaguuu cuacuucugg
421 auaguggcua uacuguacua cgcgccguau auaauguuca aacaguuggg agggggagag
481 uacaagcccc ugaucaagcu acuuugucuu gcgucuggau cuccugaaca acagaugcag
541 gacauccagg agcgugucgu caaguggcuu uucuucaggu uuaagaccua cauauucgcu
601 aaggguuacu acgcguggcu acguaaaaac aguuucagua ucgcuaucgg cgugacaaaa
661 uuguccuauc uccugauaac uauccuugug uucuacuuaa caggcuucau guucgaauau
721 ggcucuaaca cgugguaccg guacggugcu gacugguacg guaccagauu cuccucguac
781 cacgaaacua acaacucaau cacacucaca aaggacauca ucuucccaaa gaugguagcg
841 ugugagauca agcgaugggg ucccucaggg auugagguug agaccgcuca gugcguacuu
901 gccccgaaug ugcucuacca guaccuuuuc cucuuuacuu gguaccuccu gaucgcggua
961 uucuucacua accucaucag uuguuuccuc cacauuucug agauguucuu cucuaacggu
1021 acguacaaca ggaugauaga ucaaggaaug uugccagaca agcccaguua ucgguacguc
1081 uucaugaaca uuggcgccgg uggcagagag auaguccaga uucuaacaga caauuccaac
1141 ccccucuugu uuagcaagau auuugacgau cuuaccaauu uacuaaucac uacuuccaaa
1201 aacgcugacg ucauugaaaa ccugucgaag uuggauuccu ccguaauuga acuaggcagc
1261 aaagacucaa ucuaa
//
LOCUS Mle-Panxα3 66 aa UNA 02-JAN-2015
DEFINITION cDNA - ML036514a.
ACCESSION Mle-Panxα3
VERSION Mle-Panxα3
KEYWORDS .
SOURCE
ORGANISM . . . . .
.
FEATURES Location/Qualifiers
CDS order(1..50,51..66)
/modified_by="User"
N-term 1..28
TMD1 29..49
ECL1 50..66
ORIGIN
1 mlllgslgti knlsifkdls lddwldqmnr tfmflllcfm gtivavsqyt gkniscdgft
61 kfgedf
//
LOCUS Mle-Panxα4 66 aa UNA 02-JAN-2015
DEFINITION cDNA and genomic - ML129317a.
ACCESSION Mle-Panxα4
VERSION Mle-Panxα4
KEYWORDS .
SOURCE
ORGANISM . . . . .
.
FEATURES Location/Qualifiers
N-Term 1..27
TMD1 28..48
ECL1 49..66
ORIGIN
1 mviellagyk glspfkdatv ddswdqinrc yvfiamvvmg avttmrqysg tliacdgftk
61 fhpqfa
//
>Mle-Panxα3 cDNA - ML036514a.
ATGTTGTTGCTCGGCTCACTCGGAACGATCAAGAACTTGAGCATCTTCAAAGACCTGTCC
TTGGACGACTGGCTGGATCAGATGAACAGGACCTTCATGTTTCTACTGCTCTGTTTCATG
GGAACAATTGTCGCCGTTAGTCAGTACACTGGTAAAAACATATCTTGCGATGGCTTTACG
AAGTTCGGAGAAGATTTCTCGCAAGACTACTGCTGGACCCAGGGCTTGTACACGATTAAA
GAAGCGTACGACTTGCCCGAGTCCCAGATCCCGTATCCTGGGATTATCCCTGAAAACGTG
CCGGCATGTAGAGAGCACGCTCTGAAAAACGGAGGAAAGATAGTCTGCCCTCCTGAAGAT
CAAGTGAAGCCCCTGACCCGGGCTCGACATCTCTGGTACCAGTGGATACCTTTCTACTTC
TGGGTGATAGCTCCAGTCTTCTATCTCCCTTACATGTTTGTGAAAAGGATGGGACTTGAC
AGAATGAAACCTCTGTTGAAGATCATGAGCGACTACTACCACTGCACTACAGAGACACCT
TCAGAGGAGATAATAGTGAAGTGTGCAGACTGGGTATACAACAGTATAGTAGACAGGCTG
TCAGAGGGCAGCAGCTGGACAAGCTGGAGAAACAGACACGGTCTTGGTCTGGCTGTCTTG
GTCAGCAAGTTCATGTATCTCGGAGGTAGTGTCCTCGTCATGATGATGACCACTCTCATG
TTCCAGGTTGGTGATTTCAAGACGTACGGTATAGAGTGGTTGAGGCAGTTCCCTAATCCA
GAAAACTATTCGACCTCAGTTAAACACAAACTATTCCCCAAAATGGTAGCCTGTGAGATA
AAACGATGGGGCACTACCGGGCTAGAAGAGGAGAATGGAATGTGTGTCCTTGCCCCGAAT
GTCATCTACCAGTACATTTTTCTAATCATGTGGTTCGCTCTAGCCATCACCATATGCACC
AACTTCGGCAACATATTTTTCTATCTCTTCAAGCTGACAGCCACTAGATACACTTACAAC
AAATTGGTGGCCACAGGACATTTCTCCCACAAGCACCCAGGTTGGAAGTTCATGTACTAC
CGGATTGGGACGTCAGGTCGCGTTCTCCTGAACATTGTCGCTCAAAACACGAACCCTATC
ATTTTCGGGGCTATCATGGAAAAACTGACACCTTCAGTCATTAAGCATTTGAGGATAGGT
CACGTGCCCGGGGAGTATTTAACGGACCCAGCATAG
$: sb Mle-Panxα3.fa N-terminal_pep.gb -fp2n
Warning: Mle-Panxα4 is in the protein file, but not in the cDNA file
LOCUS Mle-Panxα3 1236 bp DNA UNK 01-JAN-1980
DEFINITION Mle-Panxα3 cDNA - ML036514a.
ACCESSION Mle-Panxα3
VERSION Mle-Panxα3
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
CDS order(1..198,1..198)
/label="ML036514a"
N-term 1..84
TMD1 85..147
ECL1 148..198
ORIGIN
1 atgttgttgc tcggctcact cggaacgatc aagaacttga gcatcttcaa agacctgtcc
61 ttggacgact ggctggatca gatgaacagg accttcatgt ttctactgct ctgtttcatg
121 ggaacaattg tcgccgttag tcagtacact ggtaaaaaca tatcttgcga tggctttacg
181 aagttcggag aagatttctc gcaagactac tgctggaccc agggcttgta cacgattaaa
241 gaagcgtacg acttgcccga gtcccagatc ccgtatcctg ggattatccc tgaaaacgtg
301 ccggcatgta gagagcacgc tctgaaaaac ggaggaaaga tagtctgccc tcctgaagat
361 caagtgaagc ccctgacccg ggctcgacat ctctggtacc agtggatacc tttctacttc
421 tgggtgatag ctccagtctt ctatctccct tacatgtttg tgaaaaggat gggacttgac
481 agaatgaaac ctctgttgaa gatcatgagc gactactacc actgcactac agagacacct
541 tcagaggaga taatagtgaa gtgtgcagac tgggtataca acagtatagt agacaggctg
601 tcagagggca gcagctggac aagctggaga aacagacacg gtcttggtct ggctgtcttg
661 gtcagcaagt tcatgtatct cggaggtagt gtcctcgtca tgatgatgac cactctcatg
721 ttccaggttg gtgatttcaa gacgtacggt atagagtggt tgaggcagtt ccctaatcca
781 gaaaactatt cgacctcagt taaacacaaa ctattcccca aaatggtagc ctgtgagata
841 aaacgatggg gcactaccgg gctagaagag gagaatggaa tgtgtgtcct tgccccgaat
901 gtcatctacc agtacatttt tctaatcatg tggttcgctc tagccatcac catatgcacc
961 aacttcggca acatattttt ctatctcttc aagctgacag ccactagata cacttacaac
1021 aaattggtgg ccacaggaca tttctcccac aagcacccag gttggaagtt catgtactac
1081 cggattggga cgtcaggtcg cgttctcctg aacattgtcg ctcaaaacac gaaccctatc
1141 attttcgggg ctatcatgga aaaactgaca ccttcagtca ttaagcattt gaggataggt
1201 cacgtgcccg gggagtattt aacggaccca gcatag
//
