SB Concatenate sequences
Concatenate multiple sequences into a single record. If the sequence is output in GenBank (default) or EMBL format, the position of each input sequence will be annotated in the new record.
Optional. Pass in the word 'clean' to run the clean_seq tool to remove all non-sequence characters (e.g., gaps) from the sequence before concatenation.
>Dme-Panxδ3
GFIKIDNMVFRCHYRITAILFTCCIIVTANNLIGDPISCIIPMHVINTFCWITYTYTVAG
PGLEKHSYYQWVPFVLFFQGLMFYVPHWVWKMDGKIRMITGVDDRDRILKYFVNNTHNGY
SFYFFCELLNFINVIVNIFMVDKFLGGAFMSYGTDVLKFSNMDQDRFDPMIEIFPRLTKC
TFHKFGPSGSVQKHDTLCVLALNILNEKIYIFLWFWFIILATISGVAVLYSVVITRTIRK
EGDFLILHFLSQNLSTRSYSDMLQ
>Dme-Panxδ2
MDVFGSVKGLLKIDQVDNNVFRMHYKATVIILIAFSLLVTSRQYIGDPIDCIVEIPLGVM
DTYCWIYSTFTVPEGRDVQPGSEKYHKYYQWVCFVLFFQAILFYVPRYLWKSWEGGRLKM
LVDLSVNDKDRKIVDYFGNLNRHNFYAFFFVCEALNFVNVIGQIYFVDFFLDGEFSTYGS
DVLKFTELEPDERIDPMARVFPKVTKCTFHKYGPSGSVQTHDGLCVLPLNIVNEKIYVFL
WFWFIILSIMSISLIYRIAVAPKLRHLLLRARSRAESEVEVAIGDWFLLYQLGKNIDPLI
YKEVISDLEMG
>Dme-Panxδ4
MAAVKPLSKYLQFKVHIYDAIFTLHSKVTVALLLACTFLLSSKQYFGDPIQCFGDKDMDA
FCWIYGAYLQCAVSKVVENYITYYQWVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDFK
RTHRVLVNYFETHFRYFVYVFCEILNLSISILNFLLLDVFFGGFWGRYRNALYNQWIAVF
PKCAKCEYKGGPSGSSNIYDYLCLLPLNILNEKIFAFLWIWFILAMLISLKFLYRLAVLY
PMRLQLLRPKKHLQVALNCSFGDWFVLMRVGNNISPELFRKLLEEL
>Dme-Panxδ1
YKLLGSLKSYLKWQIQTDNAVFRLHNSFTTVLLLTCSLIITATQYVGQPISCIVGVPHVV
NTFCWIHSTFTMPDRREVHPGVDFKYYTYYQWVCFVLFFQAMACYTPKFLWNKFEGGLMR
MIVGLNITRKRDALLDYLIKHVKRHKLYAYWACEFLCCINIIVQMYLMNRFFDGEFLSYG
TNIMKLSDVPQEQRVDPMVYVFPRVTKCTFHKYGPSGSLQKHDSLCILPLNIVNEKTYVF
IWFWFWILLVLLGLVFRCIIFPKFRPRLLNASNRIPMECRLDIGDWWLIYMLGRNLDPVI
YKDVMSEFQVP
$: sb Drosophila.fa -cts
LOCUS concatination 1172 aa UNK 01-JAN-1980
DEFINITION
ACCESSION concatination
VERSION concatination
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
Dme-Panxδ3 1..264
Dme-Panxδ2 265..575
Dme-Panxδ4 576..861
Dme-Panxδ1 862..1172
ORIGIN
1 gfikidnmvf rchyritail ftcciivtan nligdpisci ipmhvintfc witytytvag
61 pglekhsyyq wvpfvlffqg lmfyvphwvw kmdgkirmit gvddrdrilk yfvnnthngy
121 sfyffcelln finvivnifm vdkflggafm sygtdvlkfs nmdqdrfdpm ieifprltkc
181 tfhkfgpsgs vqkhdtlcvl alnilnekiy iflwfwfiil atisgvavly svvitrtirk
241 egdflilhfl sqnlstrsys dmlqmdvfgs vkgllkidqv dnnvfrmhyk atviiliafs
301 llvtsrqyig dpidciveip lgvmdtycwi ystftvpegr dvqpgsekyh kyyqwvcfvl
361 ffqailfyvp rylwkswegg rlkmlvdlsv ndkdrkivdy fgnlnrhnfy afffvcealn
421 fvnvigqiyf vdffldgefs tygsdvlkft elepderidp marvfpkvtk ctfhkygpsg
481 svqthdglcv lplnivneki yvflwfwfii lsimsisliy riavapklrh lllrarsrae
541 sevevaigdw fllyqlgkni dpliykevis dlemgmaavk plskylqfkv hiydaiftlh
601 skvtvallla ctfllsskqy fgdpiqcfgd kdmdafcwiy gaylqcavsk vvenyityyq
661 wvvlvllles fvfympaflw kiweggrlkh lcdfkrthrv lvnyfethfr yfvyvfceil
721 nlsisilnfl lldvffggfw gryrnalynq wiavfpkcak ceykggpsgs sniydylcll
781 plnilnekif aflwiwfila mlislkflyr lavlypmrlq llrpkkhlqv alncsfgdwf
841 vlmrvgnnis pelfrkllee lykllgslks ylkwqiqtdn avfrlhnsft tvllltcsli
901 itatqyvgqp iscivgvphv vntfcwihst ftmpdrrevh pgvdfkyyty yqwvcfvlff
961 qamacytpkf lwnkfegglm rmivglnitr krdalldyli khvkrhklya ywaceflcci
1021 niivqmylmn rffdgeflsy gtnimklsdv pqeqrvdpmv yvfprvtkct fhkygpsgsl
1081 qkhdslcilp lnivnektyv fiwfwfwill vllglvfrci ifpkfrprll nasnripmec
1141 rldigdwwli ymlgrnldpv iykdvmsefq vp
//
$: sb Drosophila.fa -cts -o fasta
>concatination
GFIKIDNMVFRCHYRITAILFTCCIIVTANNLIGDPISCIIPMHVINTFCWITYTYTVAG
PGLEKHSYYQWVPFVLFFQGLMFYVPHWVWKMDGKIRMITGVDDRDRILKYFVNNTHNGY
SFYFFCELLNFINVIVNIFMVDKFLGGAFMSYGTDVLKFSNMDQDRFDPMIEIFPRLTKC
TFHKFGPSGSVQKHDTLCVLALNILNEKIYIFLWFWFIILATISGVAVLYSVVITRTIRK
EGDFLILHFLSQNLSTRSYSDMLQMDVFGSVKGLLKIDQVDNNVFRMHYKATVIILIAFS
LLVTSRQYIGDPIDCIVEIPLGVMDTYCWIYSTFTVPEGRDVQPGSEKYHKYYQWVCFVL
FFQAILFYVPRYLWKSWEGGRLKMLVDLSVNDKDRKIVDYFGNLNRHNFYAFFFVCEALN
FVNVIGQIYFVDFFLDGEFSTYGSDVLKFTELEPDERIDPMARVFPKVTKCTFHKYGPSG
SVQTHDGLCVLPLNIVNEKIYVFLWFWFIILSIMSISLIYRIAVAPKLRHLLLRARSRAE
SEVEVAIGDWFLLYQLGKNIDPLIYKEVISDLEMGMAAVKPLSKYLQFKVHIYDAIFTLH
SKVTVALLLACTFLLSSKQYFGDPIQCFGDKDMDAFCWIYGAYLQCAVSKVVENYITYYQ
WVVLVLLLESFVFYMPAFLWKIWEGGRLKHLCDFKRTHRVLVNYFETHFRYFVYVFCEIL
NLSISILNFLLLDVFFGGFWGRYRNALYNQWIAVFPKCAKCEYKGGPSGSSNIYDYLCLL
PLNILNEKIFAFLWIWFILAMLISLKFLYRLAVLYPMRLQLLRPKKHLQVALNCSFGDWF
VLMRVGNNISPELFRKLLEELYKLLGSLKSYLKWQIQTDNAVFRLHNSFTTVLLLTCSLI
ITATQYVGQPISCIVGVPHVVNTFCWIHSTFTMPDRREVHPGVDFKYYTYYQWVCFVLFF
QAMACYTPKFLWNKFEGGLMRMIVGLNITRKRDALLDYLIKHVKRHKLYAYWACEFLCCI
NIIVQMYLMNRFFDGEFLSYGTNIMKLSDVPQEQRVDPMVYVFPRVTKCTFHKYGPSGSL
QKHDSLCILPLNIVNEKTYVFIWFWFWILLVLLGLVFRCIIFPKFRPRLLNASNRIPMEC
RLDIGDWWLIYMLGRNLDPVIYKDVMSEFQVP
#NEXUS
begin data;
dimensions ntax=4 nchar=656;
format datatype=protein missing=? gap=-;
matrix
'Mle-Panxα10A' -mrlsekstshdckacitrshnedcarrwgitiddgwdqlnrsfmfgllvvmgttvtvr-qytgsviscdgfkkfg--stfaedycwtqgqytvlegydqpnqnipcplpaafapypgifpeelshclvgarkagqsedlingtrlkcpdpdqllsptrishlwyqwvpfyfwlaaaaffmpyllyknfgigdikplvrflhn--pvesdqelkkmtdkaatwlfykfdlymseqsllasltnkhglglsvvfvkilyaavsfgcflltadmfsigdfktygsewinklklednlateekdklfpkmvacevkrwgasgieeeqgmcvlapnvinqylflilwfclvfvmfcnivsifaslikllftygsyrrllsta-flrddsa---ikhmyfnvgssgrlilhvlanntaprvfedilltlapkliqrkl-rak------------------------------------------------------------------------------------------------------------------------------------------------------dy------------------------------------------------------------------d
'Mle-Panxα7A' -mgveilfpi----------inratapiksvniddlssqlnrtfmfylsltfaititirqqlggayiacdgfsrdeeyerfaeewcwssgiytikeayemsnrvsp---------ypgiipenlpaci--------emelisggrvecpeekdvkpftriyqswypfvmfyywltalmfflpyqlykvfgfedvkavvamlqn--pvedgfekkelikrgsvwlylkstmtlsnpsvyssfivkhslafyaltvkvmylgntllmywlthkmfkfgsfaeygllwdtrnp-lnnvqslvqeklfpkvaacevkrfgasgleedqgmcmlalnvlnqylflifwfcllfvtivntisllltllniispcfmlqqfllas-sldrspavgvisklyldcgsslrfimtifawnvdpklfgeilvqlnsllakdespraevlkrrskkvkvpsprkpkllfheeikkklikrterkddnltnftnmskiskkfeglkkrnllqtksiinvsvpkkmseleveedfiltpteesgiqnnpdtkyaqedvldseyvvveqsvpetmteqesveesvpeiskaeqeggssdhidveetppasdvdrevnspivqheyqvqidlvsddgsahrlssdealfplripivklngdvlslrseslq
'Mle-Panxα3' mlllgslgti------------knlsifkdlslddwldqmnrtfmflllcfmgtivavs-qytgkniscdgftkfg--edfsqdycwtqglytikeaydlpesqip---------ypgiipenvpacr--------ehalknggkivcppedqvkpltrarhlwyqwipfyfwviapvfylpymfvkrmgldrmkpllkimsdyyhcttetpseeiivkcadwvynsivdrlsegsswtswrnrhglglavlvskfmylggsvlvmmmttlmfqvgdfktygiewlrqfpnpenystsvkhklfpkmvaceikrwgttgleeengmcvlapnviyqyiflimwfalaitictnfgniffylfkltatrytynklvatghfshkhpg---wkfmyyrigtsgrvllnivaqntnpiifgaimekltpsvikhlr-ighvpge-------------------------------------------------------------------------------------------------------yltdpa----------------------------------------------------------------------------------------------------------
'Mle-Panxα6' -mlleilanf------------kgatpfkeivlddkwdqinrcymfllcvifgtvvtfr-qytggiiacdgltkfs--aafaedycwtqglytikeaydivdnslp---------ypgllpedappcl--------srrlvsggriecppadlyleptrvhhtwyqwipfyfwvisiafigpyivykqlgvnelkpilamlhn--pvdgddvtkdqiskvsrwlaiklnifiqekstyakitqshrmfilifltkifylgvslatmyftdtmfesgryltygsewfasldkqsnytsfvrdrlfpkmvaceikrwgpsgmeeeqgmcvlapnvmnqylflifwfalvftifsntfsiffsvsthcfidggyqrfiqsc-flkensk---lkfiyfncgttgrtylhliaknvnprifeqliiklsadlveekn-kqhlkgskd-----------------------------------------------------------------------------------------------------ilv-------------------------------------------------------------------------------------------------------------
;
end;
$: sb Drosophila.nex -cts clean
LOCUS concatination 1870 aa UNK 01-JAN-1980
DEFINITION
ACCESSION concatination
VERSION concatination
KEYWORDS .
SOURCE .
ORGANISM .
.
FEATURES Location/Qualifiers
Mle-Panxα10A 1..429
Mle-Panxα7A 430..1053
Mle-Panxα3 1054..1464
Mle-Panxα6 1465..1870
ORIGIN
1 mrlsekstsh dckacitrsh nedcarrwgi tiddgwdqln rsfmfgllvv mgttvtvrqy
61 tgsviscdgf kkfgstfaed ycwtqgqytv legydqpnqn ipcplpaafa pypgifpeel
121 shclvgarka gqsedlingt rlkcpdpdql lsptrishlw yqwvpfyfwl aaaaffmpyl
181 lyknfgigdi kplvrflhnp vesdqelkkm tdkaatwlfy kfdlymseqs llasltnkhg
241 lglsvvfvki lyaavsfgcf lltadmfsig dfktygsewi nklklednla teekdklfpk
301 mvacevkrwg asgieeeqgm cvlapnvinq ylflilwfcl vfvmfcnivs ifaslikllf
361 tygsyrrlls taflrddsai khmyfnvgss grlilhvlan ntaprvfedi lltlapkliq
421 rklrakdydm gveilfpiin ratapiksvn iddlssqlnr tfmfylsltf aititirqql
481 ggayiacdgf srdeeyerfa eewcwssgiy tikeayemsn rvspypgiip enlpacieme
541 lisggrvecp eekdvkpftr iyqswypfvm fyywltalmf flpyqlykvf gfedvkavva
601 mlqnpvedgf ekkelikrgs vwlylkstmt lsnpsvyssf ivkhslafya ltvkvmylgn
661 tllmywlthk mfkfgsfaey gllwdtrnpl nnvqslvqek lfpkvaacev krfgasglee
721 dqgmcmlaln vlnqylflif wfcllfvtiv ntisllltll niispcfmlq qfllassldr
781 spavgviskl yldcgsslrf imtifawnvd pklfgeilvq lnsllakdes praevlkrrs
841 kkvkvpsprk pkllfheeik kklikrterk ddnltnftnm skiskkfegl kkrnllqtks
901 iinvsvpkkm seleveedfi ltpteesgiq nnpdtkyaqe dvldseyvvv eqsvpetmte
961 qesveesvpe iskaeqeggs sdhidveetp pasdvdrevn spivqheyqv qidlvsddgs
1021 ahrlssdeal fplripivkl ngdvlslrse slqmlllgsl gtiknlsifk dlslddwldq
1081 mnrtfmflll cfmgtivavs qytgkniscd gftkfgedfs qdycwtqgly tikeaydlpe
1141 sqipypgiip envpacreha lknggkivcp pedqvkpltr arhlwyqwip fyfwviapvf
1201 ylpymfvkrm gldrmkpllk imsdyyhctt etpseeiivk cadwvynsiv drlsegsswt
1261 swrnrhglgl avlvskfmyl ggsvlvmmmt tlmfqvgdfk tygiewlrqf pnpenystsv
1321 khklfpkmva ceikrwgttg leeengmcvl apnviyqyif limwfalait ictnfgniff
1381 ylfkltatry tynklvatgh fshkhpgwkf myyrigtsgr vllnivaqnt npiifgaime
1441 kltpsvikhl righvpgeyl tdpamlleil anfkgatpfk eivlddkwdq inrcymfllc
1501 vifgtvvtfr qytggiiacd gltkfsaafa edycwtqgly tikeaydivd nslpypgllp
1561 edappclsrr lvsggriecp padlyleptr vhhtwyqwip fyfwvisiaf igpyivykql
1621 gvnelkpila mlhnpvdgdd vtkdqiskvs rwlaiklnif iqekstyaki tqshrmfili
1681 fltkifylgv slatmyftdt mfesgrylty gsewfasldk qsnytsfvrd rlfpkmvace
1741 ikrwgpsgme eeqgmcvlap nvmnqylfli fwfalvftif sntfsiffsv sthcfidggy
1801 qrfiqscflk ensklkfiyf ncgttgrtyl hliaknvnpr ifeqliikls adlveeknkq
1861 hlkgskdilv
//
