SB Count residues
Generate residue frequency tables
Optional. Pass in the word 'concatenate' (or a truncated version of the word, like 'concat' or 'con') to combine all sequences in the file to create a single frequency table.
>Mle-Panxα9 cDNA - ML47742a.
ATGTTAGACATACTTTCAAAGTTTAAAGGAGTTACTCCTTTTAAAGGTATAACGATAGAT
GACGGGTGGGATCAACTCAATCGGAGTTTTATGTTCGTCCTGCTCGTTGTCATGGGAACG
ACTGTCACTGTCCGGCAATACACCGGCAGTGTCATCAGTTGTGACGGCTTCAAAAAGTTT
GGATCCACTTTTGCGGAGGATTACTGTTGGACCCAGGGACTGTACACAGTTTTAGAAGGA
TATGACCAACCCAGCCAAAATATCCCTTACCCAGGCCTCCTTCCAGACGAGGCACCACCC
TGTACACCAGTCAGACTCAAGGACGGTACGAGGTTAAAGTGCCCAGACCCTGATCAGTTG
TTGTCACCGACGCGGATATCCCACCTATGGTACCAGTGGGTCCCTTTTTACTTCTGGTTG
GCGGCTGCTGCCTTCTTCATGCCCTACCTTCTGTACAAGAATTTTGGCATGGGAGATATC
AAGCCTCTCGTGAGATTACTACACAATCCAGTAGAATCAGACCAGGAGTTAAAGAAGATG
ACAGACAAGGCTGCAACATGGCTGTTCTACAAGTTTGACCTGTACATGAGCGAACAGTCG
CTCCTAGCAAGTCTCACCAGAAAACACGGTCTTGGTCTATCCATGGTCTTTGTAAAGATC
CTATACGCCGCAGTGTCGTTCGGGTGTTTCCTCCTGACCGCTGAGATGTTCTCAATTGGA
GATTTTAAAACCTATGGATCAGAATGGATCAAGAAGTTAAAGTTGGAAGATAATCTAGCT
ACGGAGGAAAAGGATAAACTTTTTCCTAAGATGGTGGCATGTGAAGTGAAACGCTGGGGT
GCATCAGGTATTGAGGAGGAACAAGGGATGTGTGTCCTGGCCCCCAACGTAATCAACCAA
TACCTCTTCCTTATTCTCTGGTTCTGTCTGGTATTCGTGATGTTCTGCAACATTGTCTCC
ATATTCGCCTCCCTCATCAAGCTCCTCTTCACCTACGGCTCCTACCGCCGCCTCCTTTCC
ACCGCCTTCCTGAGGGACGACTCCGCCATCAAACACATGTACTTCAACGTGGGGTCGTCA
GGGAGATTGATATTGCACGTGCTGGCGAACAACACCGCCCCGCGCGTCTTCGAGGACATC
CTGCTGACCCTGGCCCCCAAGCTGATCCAACGGAAACTCAGAGGTAACGGAAAAGCTTTG
TAG
>Mle-Panxα7A cDNA - ML218922a-1.
ATGGGGGTGGAAATTCTGTTTCCCATAATCAACAGAGCCACCGCTCCGATCAAGTCTGTT
AACATCGACGATTTGAGTAGTCAGCTCAACCGAACTTTTATGTTTTACTTATCGCTGACT
TTCGCCATCACTATCACCATCAGGCAGCAGCTAGGCGGAGCGTACATTGCTTGTGACGGA
TTCTCCAGAGACGAGGAATATGAACGGTTTGCAGAGGAGTGGTGCTGGAGTAGTGGAATC
TACACTATCAAGGAGGCTTATGAGATGAGCAACAGAGTCAGCCCTTATCCGGGAATAATC
CCAGAAAATCTACCAGCCTGTATAGAGATGGAGCTGATATCTGGGGGCAGAGTAGAGTGT
CCTGAAGAGAAAGACGTCAAGCCTTTCACCAGGATATACCAATCTTGGTACCCATTTGTG
ATGTTTTACTATTGGCTGACTGCTTTGATGTTTTTCTTGCCGTACCAGCTTTACAAGGTC
TTTGGTTTTGAAGACGTCAAAGCGGTTGTAGCTATGTTGCAGAACCCGGTAGAGGATGGC
TTTGAGAAGAAGGAGCTGATAAAAAGGGGTTCAGTGTGGCTGTATCTTAAATCTACAATG
ACCCTTTCCAACCCTTCAGTTTACTCGAGCTTCATCGTGAAACACAGCCTAGCTTTCTAC
GCTCTTACTGTCAAGGTTATGTATTTGGGGAACACACTTCTTATGTACTGGCTGACTCAC
AAAATGTTCAAGTTTGGATCGTTTGCGGAGTACGGTCTTCTCTGGGACACAAGAAACCCA
CTTAACAACGTCCAGAGCCTTGTTCAAGAGAAATTGTTCCCAAAAGTTGCAGCGTGCGAA
GTAAAGCGCTTTGGTGCATCGGGACTTGAGGAGGACCAAGGTATGTGCATGCTGGCTCTA
AACGTCCTTAACCAGTACCTCTTCTTAATCTTCTGGTTCTGTCTCCTTTTCGTGACAATA
GTCAACACCATATCCCTCCTCCTCACCCTCCTTAACATCATCTCTCCTTGCTTTATGCTC
CAACAGTTTCTCCTGGCCTCCTCTCTTGATAGGAGTCCAGCTGTCGGTGTCATATCCAAG
CTGTATCTTGACTGTGGTTCCTCGCTAAGGTTCATCATGACTATATTTGCTTGGAATGTA
GACCCAAAATTGTTTGGGGAGATTTTAGTACAGCTCAACTCTCTCCTTGCCAAGGATGAA
TCGCCCAGGGCTGAAGTGCTGAAGCGGCGTTCAAAAAAAGTGAAAGTTCCAAGTCCAAGA
AAGCCTAAACTCTTATTTCATGAAGAAATTAAGAAAAAGTTAATAAAGAGGACTGAACGA
AAAGATGATAACCTAACCAATTTCACGAATATGTCGAAAATTAGCAAGAAGTTTGAAGGC
CTCAAAAAAAGAAATCTCCTTCAGACGAAAAGCATCATTAATGTAAGCGTTCCTAAGAAA
ATGAGCGAGTTAGAAGTAGAAGAAGATTTCATTCTTACTCCTACTGAAGAAAGTGGTATC
CAAAACAACCCTGACACCAAGTATGCTCAAGAGGATGTACTGGACTCAGAGTACGTAGTG
GTGGAACAATCAGTCCCAGAAACAATGACAGAGCAGGAATCAGTGGAGGAATCAGTCCCA
GAGATAAGTAAAGCTGAGCAAGAAGGCGGGAGCTCAGATCACATCGATGTTGAGGAGACC
CCGCCAGCATCAGATGTTGATCGCGAAGTCAACTCTCCGATTGTTCAGCACGAATATCAG
GTTCAGATCGACTTGGTTTCCGACGATGGAAGCGCCCATCGTTTATCGTCAGATGAAGCT
CTTTTTCCGCTGCGGATCCCTATTGTGAAATTGAATGGCGATGTTCTGTCATTAAGATCC
GAGAGTTTGCAGTAA
`$: sb Mnemiopsis_cds.fa -cr`
Mle-Panxα9
A: 304 25.27 %
C: 305 25.35 %
G: 282 23.44 %
T: 312 25.94 %
Mle-Panxα7A
A: 534 28.48 %
C: 405 21.6 %
G: 431 22.99 %
T: 505 26.93 %
>Mle-Panxα12 - ML25997a.
MVIDILSGFKGITPFKGITLDDGWDQINRSFMFVLCVLMGTVVTVRQYAGGIISCDGFTK
YSGSFSEDYCWTQGLYTIKEAYDLLTMNVPYPGVIPEDMPTCIERELINGGRVSCPDPET
VKPPTRVYHLWYQWVPFYFWLAAAAFFFPYLIYKHFGVGDLKPLIQMLHNPIVDEGDQNC
MAEKASMWLFYKLNVFMNENTIFAILTEKHRLFFIVMLVKVLYLIISILALYLTDEMFHI
GSFVSYGSEWATSLPEGDNETTLVKDKLFPKMVACEIKRWGPTGLEEEQGMCVLAPNVIN
QYLFLILWFAIIFCIACNCLSVLFALTKLVFVLGSYKRLLASAFLKDELHYKHMFFNIGT
SGRVLLQIVATNVSPRVFESIMANLATKLIAERLKGNGKGSV*
>Mle-Panxα9 - ML47742a.
MLDILSKFKGVTPFKGITIDDGWDQLNRSFMFVLLVVMGTTVTVRQYTGSVISCDGFKKF
GSTFAEDYCWTQGLYTVLEGYDQPSQNIPYPGLLPDEAPPCTPVRLKDGTRLKCPDPDQL
LSPTRISHLWYQWVPFYFWLAAAAFFMPYLLYKNFGMGDIKPLVRLLHNPVESDQELKKM
TDKAATWLFYKFDLYMSEQSLLASLTRKHGLGLSMVFVKILYAAVSFGCFLLTAEMFSIG
DFKTYGSEWIKKLKLEDNLATEEKDKLFPKMVACEVKRWGASGIEEEQGMCVLAPNVINQ
YLFLILWFCLVFVMFCNIVSIFASLIKLLFTYGSYRRLLSTAFLRDDSAIKHMYFNVGSS
GRLILHVLANNTAPRVFEDILLTLAPKLIQRKLRGNGKAL*
$: sb Mnemiopsis_pep.fa -cr 'concat'
concatination
% Hyrdophilic: 37.19
% Hyrdophobic: 55.85
% Negative: 11.69
% Positive: 10.95
% Uncharged: 77.11
*: 2 0.25 %
A: 45 5.6 %
C: 20 2.49 %
D: 37 4.6 %
E: 37 4.6 %
F: 58 7.21 %
G: 54 6.72 %
H: 12 1.49 %
I: 51 6.34 %
K: 50 6.22 %
L: 101 12.56 %
M: 28 3.48 %
N: 28 3.48 %
P: 37 4.6 %
Q: 21 2.61 %
R: 26 3.23 %
S: 44 5.47 %
T: 44 5.47 %
V: 56 6.97 %
W: 18 2.24 %
Y: 35 4.35 %
