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Command Line Execution
Harry Hochheiser edited this page Nov 13, 2024
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STUB- this page will eventually include details on how to run deepphe-cli
Open the Pages section (above) to view all pages by title.
Installation
Windows
Mac
Linux
Known Issues
Quickstart
Windows Quickstart Tutorial
Mac Quickstart Tutorial
Command line-execution
Using DeepPhe-XN With Your Own Files
Input File Requirements
Configuring DeepPhe Phenotype Summarizer
Specifying and Interpreting Outputs
Example Files Description
Using DeepPhe-XN Visualizer
Additional Output File Types
Example File Data Specifics
About the DeepPhe Pipeline
Pipeline Description
Code Modules
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AE
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division
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section
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temporal
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CR
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filetree
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naaccr