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Known Issues

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Johnsd11 edited this page Nov 1, 2023 · 1 revision

Known Issues

This page will include issues that have been brought up by users and have been resolved.

Initialization of annotator class "org.healthnlp.deepphe.nlp.writer.NeoplasmNeo4jWriter" failed.

  1. uninstall deepphe
  2. install deepphe
  3. launch the launcher
  4. DO NOT RUN the phenotype summarizer
  5. open: http://localhost:7474/browser/
  6. if it asks you for a password to login, put neo4j
  7. if it asks you to RESET the password, put neo4jpass
  8. save changes
  9. Run the phenotype summarizer

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   Known Issues

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   Windows Quickstart Tutorial
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   Command line-execution

Using DeepPhe-XN With Your Own Files
   Input File Requirements
   Configuring DeepPhe Phenotype Summarizer
   Specifying and Interpreting Outputs

Example Files Description
   Using DeepPhe-XN Visualizer
   Additional Output File Types
   Example File Data Specifics

About the DeepPhe Pipeline
   Pipeline Description

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