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Example File Data Specifics
John edited this page Feb 16, 2022
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Dominant Cancer for all fake patients is Breast Cancer
Distribution of note types across the corpus
| Patient ID | Clinical Notes (NOTE) | Radiology Report (RAD) | Surgical Pathology (SP) | Total Notes |
|---|---|---|---|---|
| fake_patient_1 | 5 | 1 | 4 | 10 |
| fake_patient_2 | 4 | 3 | 2 | 9 |
| fake_patient_3 | 6 | 0 | 2 | 8 |
| fake_patient_4 | 4 | 1 | 2 | 7 |
| fake_patient_5 | 5 | 2 | 3 | 10 |
| fake_patient_6 | 4 | 2 | 2 | 8 |
| fake_patient_7 | 3 | 2 | 2 | 7 |
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Installation
Windows
Mac
Linux
Known Issues
Quickstart
Windows Quickstart Tutorial
Mac Quickstart Tutorial
Command line-execution
Using DeepPhe-XN With Your Own Files
Input File Requirements
Configuring DeepPhe Phenotype Summarizer
Specifying and Interpreting Outputs
Example Files Description
Using DeepPhe-XN Visualizer
Additional Output File Types
Example File Data Specifics
About the DeepPhe Pipeline
Pipeline Description
Code Modules
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AE
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division
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section
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temporal
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CR
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filetree
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naaccr