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Jason Walker edited this page May 29, 2019 · 11 revisions

An analysis tutorial to match the CWL workflows in this repo.

Table of Contents

This section outlines the Whole Genome Clinical Assay developed at the McDonnell Genome Institute with assistance from the Institute of Clinical and Translational Sciences at Washington University School of Medicine##

  1. Pipelines
    1. Whole Genome Sequencing Clinical Assay
  2. Background - Getting Started
    1. Module 1 - Installs and Downloads
    1. Introduction
    1. Module 2 - Alignment
    2. Alignment
    1. Module 2 - Variant Detection
    1. SNVs and Small Indels

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