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tools_bisulfite_vcf2bed.cwl

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Travis CI User edited this page Feb 4, 2020 · 3 revisions

Documentation for bisulfite_vcf2bed.cwl

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Overview

convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script

Docker Requirement

mgibio/biscuit:0.3.8

Inputs

Name Label Description Type Secondary Files
vcf File
reference string
assay_non_cpg_sites {'type': 'enum', 'symbols': ['true', 'false']}

Outputs

Name Label Description Type Secondary Files
methylation_bed File[]
methylation_bedgraph File[]

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