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subworkflows_pindel_cat.cwl
Travis CI User edited this page Feb 24, 2021
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Per-region pindel
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| tumor_bam | File | ['^.bai'] | ||
| normal_bam | File | ['^.bai'] | ||
| region_file | File | |||
| insert_size | int | |||
| tumor_sample_name | string | |||
| normal_sample_name | string |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| per_region_pindel_out | File |
| Name | CWL Run |
|---|---|
| pindel | tools/pindel.cwl |
| cat | tools/cat_out.cwl |