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tools_filter_vcf_mapq0.cwl
APipe Tester edited this page Nov 2, 2022
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filter vcf for variants with high percentage of mapq0 reads
mgibio/mapq0-filter:v0.5.4
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | File | |||
| tumor_bam | File | ['.bai'] | ||
| threshold | float | |||
| sample_name | ['string'] |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| mapq0_filtered_vcf | File |