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tools_pindel.cwl
Travis CI User edited this page Feb 4, 2020
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pindel v0.2.5b8
mgibio/cle:v1.4.2
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| tumor_bam | File | ['^.bai'] | ||
| normal_bam | File | ['^.bai'] | ||
| insert_size | int | |||
| tumor_sample_name | string | |||
| normal_sample_name | string | |||
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| chromosome | string? | |||
| region_file | File? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| deletions | File | |||
| insertions | File | |||
| tandems | File | |||
| long_insertions | File | |||
| inversions | File |