subworkflows_fp_filter.cwl

Documentation for fp_filter.cwl

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fp_filter workflow

Name	Type	Secondary Files
bam	File	['.bai', '^.bai']
reference	['string', 'File']	['.fai', '^.dict']
vcf	File	['.tbi']
variant_caller	string
sample_name	string?
min_var_freq	float?

Name	Label	Description	Type	Secondary Files
unfiltered_vcf			File	['.tbi']
filtered_vcf			File	['.tbi']

Name	CWL Run
sanitize_vcf	tools/vcf_sanitize.cwl
normalize_variants	tools/normalize_variants.cwl
decompose_variants	tools/vt_decompose.cwl
index	tools/index_vcf.cwl
fp_filter	tools/fp_filter.cwl
fp_bgzip	tools/bgzip.cwl
fp_index	tools/index_vcf.cwl
hard_filter	tools/select_variants.cwl