tools_variants_to_table.cwl

Documentation for variants_to_table.cwl

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Overview

SelectVariants (GATK 3.6)

Docker Requirement

mgibio/gatk-cwl:3.6.0

Inputs

Name	Label	Description	Type	Secondary Files
reference			['string', 'File']	['.fai', '^.dict']
vcf			File	['.tbi']
fields			{'type': 'array', 'items': 'string', 'inputBinding': {'prefix': '-F'}}
genotype_fields			{'type': 'array', 'items': 'string', 'inputBinding': {'prefix': '-GF'}}

Outputs

Name	Label	Description	Type	Secondary Files
variants_tsv			File