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HIST1H1B

rdmorin edited this page Jun 24, 2024 · 18 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

HIST1H1B

Overview

This is one of several genes that encode linker histone proteins that are recurrently mutated in DLBCL and FL.1,2 Mutations are often found in the globular domain of the protein, which is critical for its interaction with DNA and other histone proteins.

History

%%{init: { 'logLevel': 'debug', 'theme': 'dark' } }%%
timeline
    title Publication timing
      2017-01-26 : Krysiak : FL
      2018-05-01 : Chapuy : DLBCL
      2021-04-01 : Sarkozy : PMBL
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Relevance tier by entity

Entity Tier Description
PMBL 1 high-confidence PMBL/cHL/GZL gene[@sarkozyMutationalLandscapeGray2021a]
DLBCL 1 high-confidence DLBCL gene [@chapuyMolecularSubtypesDiffuse2018b]
FL 1 high-confidence FL gene [@krysiakRecurrentSomaticMutations2017b]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 4.62
BL Thomas cohort 5.50
BL Panea cohort 4.00
DLBCL GAMBL genomes 8.41
DLBCL Schmitz cohort 8.51
DLBCL Reddy cohort 7.31
DLBCL Chapuy cohort 9.83
FL GAMBL genomes 5.54

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No Yes 6.345 34.135
DLBCL No Yes 5.595 0.000
FL No No 19.175 0.000

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

HIST1H1B Expression

References

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