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SERPINA9

rdmorin edited this page Jun 21, 2024 · 9 revisions

bibliography: 'morinlab.bib' csl: 'NLM.csl' link-citations: true

SERPINA9

History

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timeline
    title Publication timing
      2018-10-01 : Arthur : DLBCL
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Relevance tier by entity

Entity Tier Description
DLBCL 2-a aSHM target; Although recurrent, the relevance of mutations in DLBCL is tenuous [@arthurGenomewideDiscoverySomatic2018]

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
DLBCL GAMBL genomes 1.15
DLBCL Schmitz cohort 2.13
DLBCL Reddy cohort 0.90
DLBCL Chapuy cohort 2.14

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL Yes No 4.866 0.000
DLBCL Yes No 1.343 39.076
FL Yes No 5.716 42.861

aSHM regions

chr_name hg19_start hg19_end region regulatory_comment
chr14 94940587 94942549 TSS NA

View coding variants in ProteinPaint hg19 or hg38

View all variants in GenomePaint hg19 or hg38

SERPINA9 Expression

References

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