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rdmorin edited this page May 27, 2024 · 21 revisions

SF3B1

Relevance tier by entity

Entity Tier Description
BL 2 relevance in BL not firmly established
DLBCL 1 high-confidence DLBCL gene

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 3.00
BL Thomas cohort NA
BL Panea cohort NA
DLBCL GAMBL genomes 2.87
DLBCL Schmitz cohort 2.13
DLBCL Reddy cohort 2.00
DLBCL Chapuy cohort 2.99

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 2.277 0.000
DLBCL No No 3.245 7.004
FL No No 2.408 0.000

Note

First described in BL in 2012 by Love C

SF3B1 Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr2 198266833 T>G K700T
chr2 198266832 T>G K700N
chr2 198266821 A>C I704S

View coding variants in ProteinPaint hg19 or hg38

image

View all variants in GenomePaint hg19 or hg38

image

SF3B1 Expression

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