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Ryan Morin edited this page May 20, 2024 · 16 revisions

TOX

Relevance tier by entity

Entity Tier Description
BL 2 relevance in BL not firmly established
DLBCL 1 high-confidence DLBCL gene

Mutation incidence in large patient cohorts (GAMBL reanalysis)

Entity source frequency (%)
BL GAMBL genomes+capture 2.08
BL Thomas cohort 0.80
BL Panea cohort 5.90
DLBCL GAMBL genomes 4.21
DLBCL Schmitz cohort 5.53
DLBCL Reddy cohort 4.00
DLBCL Chapuy cohort 5.13

Mutation pattern and selective pressure estimates

Entity aSHM Significant selection dN/dS (missense) dN/dS (nonsense)
BL No No 1.503 17.955
DLBCL No No 3.481 12.292
FL No No 1.975 21.081

TOX Hotspots

Chromosome Coordinate (hg19) ref>alt HGVSp
chr8 60031445 C>G K34N
chr8 60031445 C>T K34=
chr8 60031446 T>G K34T

View coding variants in ProteinPaint hg19 or hg38

image

View all variants in GenomePaint hg19 or hg38

image

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